SkeletalAtlas

Cookies policy

Jbrowse uses cookies to remember your configuration in the genome browser, such as track load and position. When using Jbrowse in this site you accept the use of these cookies.

❌ Error

Error

❌ Error

Help

Expression Comparator

Find your gene/metabolite by name:

Paste a gene ID or list of gene IDs to be used for fold change calculation. Apply log2

Paste a list of query gene IDs

Dataset Information

Select samples

01 Mouse single cell RNAseq

growth plate scRNAseq Aga2 Wt

Art.Ch_Wt
Art.Ch_Aga2
Precartilage.Ch_Wt
Precartilage.Ch_Aga2
Resting.Ch_Wt
Resting.Ch_Aga2
Proliferative.Ch_Wt
Proliferative.Ch_Aga2
Prehypertrophic.Ch_Wt
Prehypertrophic.Ch_Aga2
Hypertrophic.Ch_Wt
Hypertrophic.Ch_Aga2
Perichondrial.Ch_Wt
Perichondrial.Ch_Aga2
Peri-Endothel_Wt
Peri-Endothel_Aga2
Platelets_Wt
Platelets_Aga2

sc mouse basic atlas v01

Art_Ch
Prearticular_Ch
Resting_Ch
Proliferative_Ch
Prehypertrophic_Ch
Hypertrophic_Ch
Perichondrial_cells
Pericytes.endothelial_cart
Muscle_cells
Osteoclasts
AdipoCAR
Endothelial_bone
Pericytes_bone
Erythroid_cells
Platelets
HSC
B_cells
Eosino-Bashophil
Dendritic_cells
Macrophages
Myeloid_prog
Neutrophils
Monocytes
NKT_cells
Schwann_cells
Fibro1
Fibro2
Periosteum
OsteoCAR
Preosteoblasts
Osteoblasts
Osteocytes
Tenocytes

02 Mouse Bulk RNAseq

00 mouse basic atlas v07

ArticularCartilage
Epiphysis
Proliferative.GP
Hypertrophic.GP
Bone
Tendon
Muscle

01 mouse EphrinB2 bone

Wt_EphrinB2
EphrinB2_cko

02 mouse Wnt7b overexpression bone

Wnt7b_OE
Wt_Wnt7b

03 mouse Piezo1 bone

Wt_Piezo1
Piezo1_cko

04 mouse Tet1-2 bone

Tet1-2_cko
Tet1_cko
Tet2_cko
Wt_Tet

05 mouse VitC bone

VitC_Gulotm1Mae_15weeks
VitC_Gulotm1Mae_20weeks
Wt_VitC

06 mouse Oscar OA

OA_Oscar-ko_dmm_2weeks
OA_Oscar-ko_dmm_4weeks
OA_Oscar-ko_sham_2weeks
OA_Oscar-ko_sham_4weeks
Wt_OA_dmm_2weeks
Wt_OA_dmm_4weeks
Wt_OA_sham_2weeks
Wt_OA_sham_4weeks

07 mouse Bglap-Bglap2

Wt_Bglap-Bglap2
Bglap-Bglap2_ko

08 mouse OI oim-oim Crtap ko

OI_Crtap_ko
OI_oim-oim
Wt_OI

09 mouse Osteomyelitis IAOM

Osteomyelitis_Control_14days
Osteomyelitis_Control_3days
Osteomyelitis_IAOM_14days
Osteomyelitis_IAOM_3days

10 mouse Osteomyelitis pretreatment IL-27

Osteomyelitis_control.GFP_14days
Osteomyelitis_control.GFP_1day
Osteomyelitis_control.GFP_3days
Osteomyelitis_control.GFP_7days
Osteomyelitis_treatment_IL.27_14days
Osteomyelitis_treatment_IL.27_1day
Osteomyelitis_treatment_IL.27_3days
Osteomyelitis_treatment_IL.27_7days

11 mouse Disuse bone

Disuse_Control
Disuse_HLU

12 mouse Hbb cko cartilage

Wt_Hbb
Hbb_cko

13 mouse Kindlin2 cko cartilage

Wt_Kindlin2
Kindlin2_cko

14 mouse HNF4a bone

Wt_HNF4a
HNF4a_cko

15 mouse Bgn bone

Fracture_Bgn_ko
Wt_Fracture
No_Fracture_Bgn_ko
Wt_No_Fracture

16 mouse premature osteocytes death

Wt_DTA
DTA_heterozygous

17 mouse OI Col1a1Jrt-Het and Sost ko

OI_Col1a1Jrt-het
OI_Col1a1Jrt-het_Sost_ko
Wt_OI_Col1a1

03 Mouse proteomics

proteomics tissues atlas v01

Bone
Cartilage
Marrow
Muscle
Tendon

04 Human single cell RNAseq

01 Human Develomental Skeleton Atlas

ChondroPRO.1
Dermfib.1
EarlyDerm.1
EarlyMesPre.1
Endothelia.1
InterChonPro.1
LateMesenPre.1
LimbMesPro.1
MesenPro(HIC1+).1
Muscle.1
Pax7Chondro.1
Pax7Myo.1
Perichondrium.1
Schwann.1
Synovial.1
Tenocytes.1
ArticularChon.2
ChondroPRO.2
CyclingChon.2
Dermfib.2
DLK1Chon.2
EarArticularChon.2
EarlyDerm.2
EarlyMesPre.2
EarlyOsteoblast.2
Endothelia.2
HypertrophicChon.2
InterChonPro.2
LateMesenPre.2
LimbMesPro.2
Lymphatic.2
MaturingChondro.2
MesenPro(HIC1+).2
Muscle.2
Osteoblast.2
Pax7Chondro.2
Pax7Myo.2
Perichondrium.2
PerineuralFib.2
Schwann.2
Synovial.2
Tenocytes.2
ArticularChon.3
ChondroPRO.3
CyclingChon.3
Dermfib.3
DLK1Chon.3
EarArticularChon.3
EarlyDerm.3
EarlyMesPre.3
EarlyOsteoblast.3
Endothelia.3
HypertrophicChon.3
InterChonPro.3
LateMesenPre.3
LimbMesPro.3
Lymphatic.3
MaturingChondro.3
MesenPro(HIC1+).3
Muscle.3
Osteoblast.3
Pax7Chondro.3
Pax7Myo.3
Perichondrium.3
PerineuralFib.3
Schwann.3
Synovial.3
Tenocytes.3

02 human osteoartritris joint Ji 2019